species:   Clros
pid:       PID2244
parent:    cro-mir-40
paralog:   
locus:     CADEHS020000345.2:350320-350379
matures:   ['UCGAAUCCGUACUGAUGA', 'GUCAGGCGGUCGGGU']
srr:       ERR5960091
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram CADEHS020000345.2:350320-350379

11 out of bounds
6 alignments
1 proper strand
1 stranded perfect matches

  ************                           ***************    
GUCAGGCGGUCGGGUAGCGACAGGACAUCCGUCCAUCGUUGUUCGAAUCCGUACUGAUGA
((((((((((((((((((((..((((....)))).)))))))))))..)))).)))))..
------------------------------------------UCGAAUCCGUACUGAUGA l=18 a=0 c
GUCAGGCGGUCGGGU--------------------------------------------- l=15 a=0 c*
-------------------------------------------CGAAUCCGUACUG---- l=13 a=1 ma
----GGCGGUCGGG---------------------------------------------- l=10 a=0 ma*

-------------------------------------------CGAAUCCGUACUG---- l=13 a=1 (ma)

mb-01011
ax-1011001
ku-01
ss-100011011100
fn-001
